PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143846.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 318aa    MW: 34817 Da    PI: 7.4432
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.91.5e-2949142185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rWt+qe+l+Li+++r  e+r+rrg+         +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++
  XP_009143846.1  49 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEEAESYWVMRNDV 142
                     8**********************97778888888******************************************************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-1349139No hitNo description
Gene3DG3DSA:1.10.10.605.5E-549114IPR009057Homeodomain-like
PROSITE profilePS500906.449115IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAMEPLGLGV NVADGDGNVN GGGENNNTTT TTPSNEAGDD GVKTARLPRW TRQEILVLIQ  60
GKRVAENRVR RGRAAGMALG SGQMEPKWAS VSSYCRRHGV NRGPVQCRKR WSNLAGDYKK  120
IKEWESQVKE EAESYWVMRN DVRRERKLPG FFDKEVYDIV DGGVVPPANP VLALGLAPAS  180
TSAEEPARSV EKLSLASAPK SLIDVIDKEK QAACEAADQG GMKERHPEAA NPEAASTSQE  240
ERKRKRTSSG EEEGEATKSR QDQLIEILER NGQLLAAQLE VQNTNLKLDR EQRKDHGDNL  300
VAVLNKLADA VAKIADKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892921e-143AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143846.10.0PREDICTED: uncharacterized protein LOC103867524
SwissprotQ8VZ201e-170ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLM4CMP80.0M4CMP8_BRARP; Uncharacterized protein
STRINGBra005486.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-162Trihelix family protein